torchref.cli.mtz2map module
Convert MTZ map coefficients to CCP4 map file.
Reads amplitude and phase columns from an MTZ file, expands to P1, and computes a real-space electron density map via FFT.
Similar to phenix.mtz2map but with explicit column name control.
Examples
# 2mFo-DFc map from refinement output
torchref.mtz2map -sf refined.mtz -csf FWT -cphi PHWT -o 2fofc.ccp4
# mFo-DFc difference map
torchref.mtz2map -sf refined.mtz -csf DELFWT -cphi PHDELWT -o fofc.ccp4
# Custom columns with resolution cutoff
torchref.mtz2map -sf data.mtz -csf 2FOFCWT -cphi PH2FOFCWT --dmin 2.0 -o map.ccp4